Mohapatra A, Basu G, Sen I, Asirvatham R, Michael JS, Pulimood AB, John GT. Tuberculosis in a renal allograft recipient presenting with intussusception. Indian J Nephrol. 2012 Jan;22(1):52-6. doi: 10.4103/0971-4065.83741. PMID: 22279345; PMCID: PMC3263066.

Boddu D, Verghese VP, Michael JS, Chacko A, Jeyaseelan V. Utility of QuantiFERON®-TB gold In-Tube test compared with tuberculin skin test in diagnosing tuberculosis in Indian children with malnutrition. Indian J Med Microbiol. 2019 Jul-Sep;37(3):433-437. doi: 10.4103/ijmm.IJMM_19_227. PMID: 32003347.

Balaji V, Daley P, Anand AA, Sudarsanam T, Michael JS, Sahni RD, Chordia P, George IA, Thomas K, Ganesh A, John KR, Mathai D. Risk factors for MDR and XDR-TB in a tertiary referral hospital in India. PLoS One. 2010 Mar 4;5(3):e9527. doi: 10.1371/journal.pone.0009527. PMID: 20209106; PMCID: PMC2832005.

Ebenezer K, James EJ, Michael JS, Kang G, Verghese VP. Ventilator-associated Acinetobacter baumannii pneumonia. Indian Pediatr. 2011 Dec;48(12):964-6. doi: 10.1007/s13312-011-0152-4. Epub 2011 May 30. PMID: 21719944.

Daley P, Michael JS, Hmar P, Latha A, Chordia P, Mathai D, John KR, Pai M. Blinded evaluation of commercial urinary lipoarabinomannan for active tuberculosis: a pilot study. Int J Tuberc Lung Dis. 2009 Aug;13(8):989-95. PMID: 19723379; PMCID: PMC2951988.

Michael JS, Daley P, Kalaiselvan S, Latha A, Vijayakumar J, Mathai D, John KR, Pai M. Diagnostic accuracy of the microscopic observation drug susceptibility assay: a pilot study from India. Int J Tuberc Lung Dis. 2010 Apr;14(4):482-8. PMID: 20202307; PMCID: PMC2951990.

Mohapatra A, Basu G, Sen I, Asirvatham R, Michael JS, Pulimood AB, John GT. Tuberculosis in a renal allograft recipient presenting with intussusception. Indian J Nephrol. 2012 Jan;22(1):52-6. doi: 10.4103/0971-4065.83741. PMID: 22279345; PMCID: PMC3263066.

Boddu D, Verghese VP, Michael JS, Chacko A, Jeyaseelan V. Utility of QuantiFERON®-TB gold In-Tube test compared with tuberculin skin test in diagnosing tuberculosis in Indian children with malnutrition. Indian J Med Microbiol. 2019 Jul-Sep;37(3):433-437. doi: 10.4103/ijmm.IJMM_19_227. PMID: 32003347.

Balaji V, Daley P, Anand AA, Sudarsanam T, Michael JS, Sahni RD, Chordia P, George IA, Thomas K, Ganesh A, John KR, Mathai D. Risk factors for MDR and XDR-TB in a tertiary referral hospital in India. PLoS One. 2010 Mar 4;5(3):e9527. doi: 10.1371/journal.pone.0009527. PMID: 20209106; PMCID: PMC2832005.

Ebenezer K, James EJ, Michael JS, Kang G, Verghese VP. Ventilator-associated Acinetobacter baumannii pneumonia. Indian Pediatr. 2011 Dec;48(12):964-6. doi: 10.1007/s13312-011-0152-4. Epub 2011 May 30. PMID: 21719944.

Daley P, Michael JS, Hmar P, Latha A, Chordia P, Mathai D, John KR, Pai M. Blinded evaluation of commercial urinary lipoarabinomannan for active tuberculosis: a pilot study. Int J Tuberc Lung Dis. 2009 Aug;13(8):989-95. PMID: 19723379; PMCID: PMC2951988.

Michael JS, Daley P, Kalaiselvan S, Latha A, Vijayakumar J, Mathai D, John KR, Pai M. Diagnostic accuracy of the microscopic observation drug susceptibility assay: a pilot study from India. Int J Tuberc Lung Dis. 2010 Apr;14(4):482-8. PMID: 20202307; PMCID: PMC2951990.

Suzana S, Ninan MM, Gowri M, Venkatesh K, Rupali P, Michael JS. Xpert MTB/Rif for the diagnosis of extrapulmonary tuberculosis--an experience from a tertiary care centre in South India. Trop Med Int Health. 2016 Mar;21(3):385-92. doi: 10.1111/tmi.12655. Epub 2016 Jan 19. PMID: 26671654.

Arockiaraj J, Balaji GS, Cherian VM, T S J, Thomas BP, Michael JS, Poonnoose PM. Drug resistant Skeletal Tuberculosis in a tertiary care centre in South India. J Clin Orthop Trauma. 2018 Mar;9(Suppl 1):S44-S48. doi: 10.1016/j.jcot.2017.12.009. Epub 2017 Dec 29. PMID: 29628698; PMCID: PMC5883913.

Michael JS, Sridharan G. A pilot study of seroprevalence of influenza virus type A in Vellore, south India. Indian J Med Res. 2002 May;115:173-5. PMID: 12362555.

Joy Sarojini Michael. Molecular Characterisation of Stenotrophomonasmaltophilia in Nosocomial Infections: Challenges and Way Forward Journal of Clinical and Diagnostic Research 2019 13(1):DC01-DC04. DOI: 10.7860/JCDR/2019/39753.12434

Michael RC, Michael JS, Mathews MS, Rupa V. Unusual presentation of entomophthoromycosis. Indian J Med Microbiol. 2009 Apr-Jun;27(2):156-8. doi: 10.4103/0255-0857.49432. PMID: 19384042.

Denkinger CM, Kalantri Y, Schumacher SG, Michael JS, Shankar D, Saxena A, Sriram N, Balamugesh T, Luo R, Pollock NR, Pai M, Christopher DJ. Challenges in the development of an immunochromatographic interferon-gamma test for diagnosis of pleural tuberculosis. PLoS One. 2013 Dec 23;8(12):e85447. doi: 10.1371/journal.pone.0085447. PMID: 24376880; PMCID: PMC3871622.

Christopher DJ, Schumacher SG, Michael JS, Luo R, Balamugesh T, Duraikannan P, Pollock NR, Pai M, Denkinger CM. Performance of Xpert MTB/RIF on pleural tissue for the diagnosis of pleural tuberculosis. Eur Respir J. 2013 Nov;42(5):1427-9. doi: 10.1183/09031936.00103213. Epub 2013 Jul 30. PMID: 23900990.

Zwerling A, Pai M, Michael JS, Christopher DJ. Serial testing using interferon-γ release assays in nursing students in India. Eur Respir J. 2014 Jul;44(1):257-60. doi: 10.1183/09031936.00011914. Epub 2014 Apr 2. PMID: 24696119.

Iyampillai T, Michael JS, Mathai E, Mathews MS. Use of CHROMagar medium in the differentiation of Candida species: is it cost-effective in developing countries? Ann Trop Med Parasitol. 2004 Apr;98(3):279-82. doi: 10.1179/000349804225003244. PMID: 15119973.

Christopher DJ, Jeyaseelan L, Michael JS, Veeraraghavan B, Manipadam MT, David T, Gupta M, Yadav B. Burden of diabetes among patients with tuberculosis: 10-year experience from a tertiary care referral teaching hospital in South India. Lung India. 2020 May-Jun;37(3):232-237. doi: 10.4103/lungindia.lungindia_111_19. PMID: 32367845; PMCID: PMC7353927.

Selvin SS, Korah SM, Michael JS, Raj PM, Jacob P. Series of five cases of Papulaspora equi keratomycosis. Cornea. 2014 Jun;33(6):640-3. doi: 10.1097/ICO.0000000000000108. PMID: 24699559.

Bhatt AN, Tharyan P, Michael JS, Christopher DJ, Varghese GM, Sathyendra S, Rajan SJ, George K, Prasad JH. Treatment outcomes with daily self-administered treatment and thrice-weekly directly-observed treatment in two cohorts of newly-diagnosed, sputum-positive adults with pulmonary tuberculosis. Indian J Tuberc. 2020 Jan;67(1):105-111. doi: 10.1016/j.ijtb.2017.05.012. Epub 2017 Jun 24. PMID: 32192603.

Abraham, D., Ravindran, V., Rose, V. and Michael, J. S. Effectiveness of chlorhexidine bath, saline bath, and standard bath on bacterial colonization on the skin Asian Journal of Pharmaceutical and Clinical Research; 2018, 11 (10): 330-334 n access article under the CC BY license (http://creativecommons. 10.22159/ajpcr.2018.v11i10.25893

Michael JS, Abraham OC, Mathai D, Mathews MS. Varied clinical manifestations of Penicillium marneffei in patients with human immunodeficiency virus: a report from south India. Mycoses. 2005 Mar;48(2):120-1. doi: 10.1111/j.1439-0507.2004.01080.x. PMID: 15743429.

Rupali P, Palanikumar P, Shanthamurthy D, Peter JV, Kandasamy S, Zacchaeus NGP, Alexander H, Thangavelu P, Karthik R, Abraham OC, Michael JS, Paul H, Veeraraghavan B, Chacko B, Jeyaseelan V, Alangaden G, Prentiss T, Zervos MJ. Impact of an antimicrobial stewardship intervention in India: Evaluation of post-prescription review and feedback as a method of promoting optimal antimicrobial use in the intensive care units of a tertiary-care hospital. Infect Control Hosp Epidemiol. 2019 May;40(5):512-519. doi: 10.1017/ice.2019.29. PMID: 31084674.

Stall N, Rubin T, Michael JS, Mathai D, Abraham OC, Mathews P, Thomas K, John M, Daley P. Does solid culture for tuberculosis influence clinical decision making in India? Int J Tuberc Lung Dis. 2011 May;15(5):641-6. doi: 10.5588/ijtld.10.0195. PMID: 21756515.

Mathuram AJ, Michael JS, Turaka VP, Jasmine S, Carey R, Ramya I. Mycobacterial blood culture as the only means of diagnosis of disseminated tuberculosis in advanced HIV infection. Trop Doct. 2018 Apr;48(2):100-102. doi: 10.1177/0049475517747491. Epub 2017 Dec 13. PMID: 29235968.

Chandy SJ, Michael JS, Veeraraghavan B, Abraham OC, Bachhav SS, Kshirsagar NA. ICMR programme on Antibiotic Stewardship, Prevention of Infection & Control (ASPIC). Indian J Med Res. 2014 Feb;139(2):226-30. PMID: 24718396; PMCID: PMC4001333.

Wareham DW, Michael JS , Das SS. Advances in Bacterial specific imaging. Brazilian Archives of Biology and Technology. 2005; 48:145-152.

David VG, Korula A, Choudhrie L, Michael JS, Jacob S, Jacob CK, John GT. Cryptococcal granulomatous interstitial nephritis and dissemination in a patient with untreated lupus nephritis. Nephrol Dial Transplant. 2009 Oct;24(10):3243-5. doi: 10.1093/ndt/gfp293. Epub 2009 Jun 13. PMID: 19525518.

Stall N, Rubin T, Michael JS, Mathai D, Abraham OC, Mathews P, Thomas K, John M, Daley P. Does solid culture for tuberculosis influence clinical decision making in India? Int J Tuberc Lung Dis. 2011 May;15(5):641-6. doi: 10.5588/ijtld.10.0195. PMID: 21756515.

Sethuvel DPM, Perumalla S, Anandan S, Michael JS, Ragupathi NKD, Gajendran R, Walia K, Veeraraghavan B. Antimicrobial resistance, virulence & plasmid profiles among clinical isolates of Shigella serogroups. Indian J Med Res. 2019 Feb;149(2):247-256. doi: 10.4103/ijmr.IJMR_2077_17. PMID: 31219090; PMCID: PMC6563743.

Alland D, Michael JS, Denkinger CM, Cirillo DM. Molecular diagnosis of rifampin-monoresistant tuberculosis in Indian patients: problems with a discordance analysis. J Clin Microbiol. 2014 Sep;52(9):3503. doi: 10.1128/JCM.01607-14. PMID: 25143418; PMCID: PMC4313200.

Korula A, Abraham A, Abubacker FN, Viswabandya A, Lakshmi KM, Abraham OC, Rupali P, Varghese GM, Michael JS, Srivastava A, Mathews V, George B. Invasive fungal infection following chemotherapy for acute myeloid leukaemia-Experience from a developing country. Mycoses. 2017 Oct;60(10):686-691. doi: 10.1111/myc.12646. Epub 2017 Jul 23. PMID: 28736936.

Schumacher SG, Thangakunam B, Denkinger CM, Oliver AA, Shakti KB, Qin ZZ, Michael JS, Luo R, Pai M, Christopher DJ. Impact of point-of-care implementation of Xpert® MTB/RIF: product vs. process innovation. Int J Tuberc Lung Dis. 2015 Sep;19(9):1084-90. doi: 10.5588/ijtld.15.0120. PMID: 26260830.

Bera C, Michael JS, Burad D, Shirly SB, Gibikote S, Ramakrishna B, Goel A, Eapen CE. Tissue Xpert™ MTB/Rif assay is of limited use in diagnosing peritoneal tuberculosis in patients with exudative ascites. Indian J Gastroenterol. 2015 Sep;34(5):395-8. doi: 10.1007/s12664-015-0599-7. Epub 2015 Nov 4. PMID: 26531065.

Saha A, Shanthi F X M, Winston A B, Das S, Kumar A, Michael JS, Balamugesh T. Prevalence of Hepatotoxicity From Antituberculosis Therapy: A Five-Year Experience From South India. J Prim Care Community Health. 2016 Jul;7(3):171-4. doi: 10.1177/2150131916642431. Epub 2016 Apr 7. PMID: 27056794; PMCID: PMC5932686.

John D, Irodi A, Michael JS. Concurrent Infections of Conidiobolus Coronatus with Disseminated Tuberculosis Presenting as Bilateral Orbital Cellulitis. J Clin Diagn Res. 2016 Apr;10(4):ND01-2. doi: 10.7860/JCDR/2016/16790.7535. Epub 2016 Apr 1. PMID: 27190852; PMCID: PMC4866150.

Arockiaraj J, Michael JS, Amritanand R, David KS, Krishnan V. The role of Xpert MTB/RIF assay in the diagnosis of tubercular spondylodiscitis. Eur Spine J. 2017 Dec;26(12):3162-3169. doi: 10.1007/s00586-017-5076-9. Epub 2017 Apr 8. PMID: 28391384.

Samuel BP, Michael JS, Chandrasingh J, Kumar S, Devasia A, Kekre NS. Efficacy and role of Xpert®Mycobacterium tuberculosis/rifampicin assay in urinary tuberculosis. Indian J Urol. 2018 Oct-Dec;34(4):268-272. doi: 10.4103/iju.IJU_189_18. PMID: 30337781; PMCID: PMC6174720.

Govindaswamy A, Sakthi D, Pai R, Jeyaseelan L, Michael JS. Pyrosequencing: a rapid and effective sequencing method to diagnose drug-resistant tuberculosis. J Med Microbiol. 2018 Sep;67(9):1212-1216. doi: 10.1099/jmm.0.000669. Epub 2018 Jul 20. PMID: 30028665.

Suzana S, Shanmugam S, Latha P N S, Michael JS. Molecular genotyping to differentiate endogenous reactivation and exogenous reinfection of recurrent tuberculosis. J Clin Tuberc Other Mycobact Dis. 2018 Oct 9;13:17-21. doi: 10.1016/j.jctube.2018.10.001. Erratum in: J Clin Tuberc Other Mycobact Dis. 2020 Sep 09;21:100177. PMID: 31720407; PMCID: PMC6830134.

Hooda A, Pati PK, John B, George PV, Michael JS. Disseminated Mycobacterium chelonae infection causing pacemaker lead endocarditis in an immunocompetent host. BMJ Case Rep. 2014 Dec 22;2014:bcr2014206042. doi: 10.1136/bcr-2014-206042. PMID: 25535221; PMCID: PMC4275738.

Daley P, Jagannathan V, John KR, Sarojini J, Latha A, Vieth R, Suzana S, Jeyaseelan L, Christopher DJ, Smieja M, Mathai D. Adjunctive vitamin D for treatment of active tuberculosis in India: a randomised, double-blind, placebo-controlled trial. Lancet Infect Dis. 2015 May;15(5):528-34. doi: 10.1016/S1473-3099(15)70053-8. Epub 2015 Apr 8. PMID: 25863562.

Maji A, Misra R, Kumar Mondal A, Kumar D, Bajaj D, Singhal A, Arora G, Bhaduri A, Sajid A, Bhatia S, Singh S, Singh H, Rao V, Dash D, Baby Shalini E, Sarojini Michael J, Chaudhary A, Gokhale RS, Singh Y. Expression profiling of lymph nodes in tuberculosis patients reveal inflammatory milieu at site of infection. Sci Rep. 2015 Oct 15;5:15214. doi: 10.1038/srep15214. PMID: 26469538; PMCID: PMC4606593.

Suzana S, Shanmugam S, Uma Devi KR, Swarna Latha PN, Michael JS. Spoligotyping of Mycobacterium tuberculosis isolates at a tertiary care hospital in India. Trop Med Int Health. 2017 Jun;22(6):703-707. doi: 10.1111/tmi.12875. Epub 2017 May 4. PMID: 28374900.

Wareham DW, Michael JS, Warwick S, Whitlock P, Wood A, Das SS. The dangers of dog bites. J Clin Pathol. 2007 Mar;60(3):328-9. doi: 10.1136/jcp.2006.037671. Epub 2006 Aug 30. PMID: 16943221; PMCID: PMC1860579.

Sethuvel DPM, Anandan S, Michael JS, Murugan D, Neeravi A, Verghese VP, Walia K, Veeraraghavan B. Virulence gene profiles of Shigella species isolated from stool specimens in India: its association with clinical manifestation and antimicrobial resistance. Pathog Glob Health. 2019 Jun;113(4):173-179. doi: 10.1080/20477724.2019.1632062. Epub 2019 Jun 21. PMID: 31221039; PMCID: PMC6758641.

Govindaswamy A, Sakthi D, Pai R, Jeyaseelan L, Michael JS. Pyrosequencing: a rapid and effective sequencing method to diagnose drug-resistant tuberculosis. J Med Microbiol. 2018 Sep;67(9):1212-1216. doi: 10.1099/jmm.0.000669. Epub 2018 Jul 20. PMID: 30028665.

Arockiaraj J, Karthik R, Michael JS, Amritanand R, David KS, Krishnan V, Sundararaj GD. 'Need of the Hour': Early Diagnosis and Management of Multidrug Resistant Tuberculosis of the Spine: An Analysis of 30 Patients from a "High Multidrug Resistant Tuberculosis Burden" Country. Asian Spine J. 2019 Apr;13(2):265-271. doi: 10.31616/asj.2018.0073. Epub 2019 Jan 24. PMID: 30669824; PMCID: PMC6454281.

Saha A, Shanthi F X M, Winston A B, Das S, Kumar A, Michael JS, Balamugesh T. Prevalence of Hepatotoxicity From Antituberculosis Therapy: A Five-Year Experience From South India. J Prim Care Community Health. 2016 Jul;7(3):171-4. doi: 10.1177/2150131916642431. Epub 2016 Apr 7. PMID: 27056794; PMCID: PMC5932686.

Varghese GM, Pise G, Michael SJ, Jacob M, George R. Disseminated Penicillium marneffei infection in a human immunodeficiency virus-infected individual. J PostgrAA

Paul N, Mathai E, Abraham OC, Michael JS, Mathai D. Factors associated with candiduria and related mortality. J Infect. 2007 Nov;55(5):450-5. doi: 10.1016/j.jinf.2007.06.010. Epub 2007 Aug 16. PMID: 17706785.

Daley P, Michael JS, S K, Latha A, Mathai D, John KR, Pai M. A pilot study of short-duration sputum pretreatment procedures for optimizing smear microscopy for tuberculosis. PLoS One. 2009 May 20;4(5):e5626. doi: 10.1371/journal.pone.0005626. PMID: 19461963; PMCID: PMC2680966.

Christopher DJ, Daley P, Armstrong L, James P, Gupta R, Premkumar B, Michael JS, Radha V, Zwerling A, Schiller I, Dendukuri N, Pai M. Tuberculosis infection among young nursing trainees in South India. PLoS One. 2010 Apr 29;5(4):e10408. doi: 10.1371/journal.pone.0010408. PMID: 20454447; PMCID: PMC2861589.

Boehme CC, Nicol MP, Nabeta P, Michael JS, Gotuzzo E, Tahirli R, Gler MT, Blakemore R, Worodria W, Gray C, Huang L, Caceres T, Mehdiyev R, Raymond L, Whitelaw A, Sagadevan K, Alexander H, Albert H, Cobelens F, Cox H, Alland D, Perkins MD. Feasibility, diagnostic accuracy, and effectiveness of decentralised use of the Xpert MTB/RIF test for diagnosis of tuberculosis and multidrug resistance: a multicentre implementation study. Lancet. 2011 Apr 30;377(9776):1495-505. doi: 10.1016/S0140-6736(11)60438-8. Epub 2011 Apr 18. PMID: 21507477; PMCID: PMC3085933.

Michael RC, Michael JS. Tuberculosis in otorhinolaryngology: clinical presentation and diagnostic challenges. Int J Otolaryngol. 2011;2011:686894. doi: 10.1155/2011/686894. Epub 2011 Oct 25. PMID: 22121369; PMCID: PMC3202115.

Lazarus RP, Kalaiselvan S, John KR, Michael JS. Evaluation of the microscopic observational drug susceptibility assay for rapid and efficient diagnosis of multi-drug resistant tuberculosis. Indian J Med Microbiol. 2012 Jan-Mar;30(1):64-8. doi: 10.4103/0255-0857.93039. PMID: 22361763.

Michael JS, John TJ. Extensively drug-resistant tuberculosis in India: a review. Indian J Med Res. 2012 Oct;136(4):599-604. PMID: 23168700; PMCID: PMC3516027.

Pattnaik S, John KR, Shalini E, Michael JS. Agreement between skin testing and QuantiFERON-TB Gold In-Tube assay (QFT-TB) in detecting latent tuberculosis infection among household contacts in India. Indian J Tuberc. 2012 Oct;59(4):214-8. PMID: 23342541.

John TJ, Michael JS. The term "partial extensively drug resistance" in tuberculosis is superfluous. Indian Pediatr. 2012 Apr;49(4):335. doi: 10.1007/s13312-012-0030-8. PMID: 22565085.

F. Sheeba, R Thamburaj ,J S Michael , P Maqlin , J J Mammen. Segmentation of sputum smear images for detection of tuberculosis bacilli. BMC Infectious Diseases. 2012, 12(Suppl 1):O14 Link

Michael JS, Abraham OC, Mathai. D, Mathews MS. Varied clinical presentation of immunocompromised patients infected with Penicillummarneffei. – A report of 4 cases.Mycoses.2005 ; 48(2):120-1. Link

J S Michael, D Wareham, A. El-Karim, S.Warwick, Michael R Millar, S S Das. Evaluation of 16SrDNA PCR and sequencing for the diagnosis of infective endocarditis. June 2007. Clinical Research in Cardiology 96(6):411-412

Ninan MM, Rupali P, James P, Michael JS. Robustness of the Line Probe Assay for the Rapid Diagnosis and Characterization of Mutations in Extensively Drug-Resistant Tuberculosis. Microb Drug Resist. 2019 Jul/Aug;25(6):799-804. doi: 10.1089/mdr.2018.0268. Epub 2019 Mar 5. PMID: 30785833.

Michael RC, Michael JS, Ashbee HR, Mathews MS . Fungal Sinusitis- An audit of 7 year experience from a tertiary care centre . - Indian J PatholMicrobiol . 2008 ; 51(4): 493-6. Link

Vijay Prakash Turaka, Roshini G Nair, Tunny Sebastian, Rajesh Kannangai, Joy Sarojini Michael, George M Varghese Risk factors for active tuberculosis in human immunodeficiency virus-infected individuals CHRISMED J Health Res 6(3) : 167-171 Link

Manesh A, Rupali P, Sullivan MO, Mohanraj P, Rupa V, George B, Michael JS. Mucormycosis-A clinicoepidemiological review of cases over 10 years. Mycoses. 2019 Apr;62(4):391-398. doi: 10.1111/myc.12897. Epub 2019 Feb 19. PMID: 30685896.

Arockiaraj J, Karthik R, Michael JS, Amritanand R, David KS, Krishnan V, Sundararaj GD. 'Need of the Hour': Early Diagnosis and Management of Multidrug Resistant Tuberculosis of the Spine: An Analysis of 30 Patients from a "High Multidrug Resistant Tuberculosis Burden" Country. Asian Spine J. 2019 Apr;13(2):265-271. doi: 10.31616/asj.2018.0073. Epub 2019 Jan 24. PMID: 30669824; PMCID: PMC6454281.

Michael JS, Lalitha MK, Cherian T, Thomas K, Mathai D, Abraham OC, Brahmadathan.K.N. Evaluation of polymerase chain reaction for rapid diagnosis of tuberculous meningitis. Indian J Tuberc. 2002; 49: 133-137

Ninan MM, Gowri M, Christopher DJ, Rupali P, Michael JS. The diagnostic utility of line probe assays for multidrug-resistant tuberculosis. Pathog Glob Health. 2016 Jun-Jul;110(4-5):194-9. doi: 10.1080/20477724.2016.1214350. Epub 2016 Aug 8. PMID: 27499239; PMCID: PMC5072114.

Patel A, Kaur H, Xess I, Michael JS, Savio J, Rudramurthy S, Singh R, Shastri P, Umabala P, Sardana R, Kindo A, Capoor MR, Mohan S, Muthu V, Agarwal R, Chakrabarti A. A multicentre observational study on the epidemiology, risk factors, management and outcomes of mucormycosis in India. Clin Microbiol Infect. 2020 Jul;26(7):944.e9-944.e15. doi: 10.1016/j.cmi.2019.11.021. Epub 2019 Dec 4. PMID: 31811914.

Duffy SC, Srinivasan S, Schilling MA, Stuber T, Danchuk SN, Michael JS, Venkatesan M, Bansal N, Maan S, Jindal N, Chaudhary D, Dandapat P, Katani R, Chothe S, Veerasami M, Robbe-Austerman S, Juleff N, Kapur V, Behr MA. Reconsidering Mycobacterium bovis as a proxy for zoonotic tuberculosis: a molecular epidemiological surveillance study. Lancet Microbe. 2020 Jun;1(2):e66-e73. doi: 10.1016/S2666-5247(20)30038-0. PMID: 32642742; PMCID: PMC7325494.

Thampy A, Ninan MM, Michael JS, James P, Rupali P. Clinical implications of high-risk mutations in drug resistant tuberculosis (DR-TB): An observational cohort study. Indian J Med Microbiol. 2021 Jun 11:S0255-0857(21)04122-0. doi: 10.1016/j.ijmmb.2021.05.020. Epub ahead of print. PMID: 34127320.

Sam AS, Ninan MM, Ranjani R, Devanga Raghupathi NK, Balaji V, Michael JS. Nontuberculous mycobacteria - clinical and laboratory diagnosis: experiences from a TB endemic country. Future Sci OA. 2020 Jul 30;6(9):FSO612. doi: 10.2144/fsoa-2020-0023. PMID: 33235807; PMCID: PMC7668123.

Vyas S, Thangakunam B, Gupta R, Michael JS, Christopher DJ. Interferon gamma release assay and tuberculin skin test positivity in sarcoidosis. Lung India. 2015 Jan-Feb;32(1):91-2. doi: 10.4103/0970-2113.148467. PMID: 25624613; PMCID: PMC4298936.

Shankar C, Kumar M, Baskaran A, Paul MM, Ponmudi N, Santhanam S, Michael JS, Veeraraghavan B. Molecular characterisation for clonality and transmission dynamics of an outbreak of Klebsiella pneumoniae amongst neonates in a tertiary care centre in South India. Indian J Med Microbiol. 2018 Jan-Mar;36(1):54-60. doi: 10.4103/ijmm.IJMM_17_426. PMID: 29735827.

Samuel, B. P., Michael, J. S., Chandrasingh, J., Kumar, S., Devasia, A. and Kekre, N. S. Efficacy and role of Xpert((R)) Mycobacterium tuberculosis/rifampicin assay in urinary tuberculosis Indian J Urol; 2018, 34 (4): 268-272 Link

Vassall A, van Kampen S, Sohn H, Michael JS, John KR, den Boon S, Davis JL, Whitelaw A, Nicol MP, Gler MT, Khaliqov A, Zamudio C, Perkins MD, Boehme CC, Cobelens F. Rapid diagnosis of tuberculosis with the Xpert MTB/RIF assay in high burden countries: a cost-effectiveness analysis. PLoS Med. 2011 Nov;8(11):e1001120. doi: 10.1371/journal.pmed.1001120. Epub 2011 Nov 8. PMID: 22087078; PMCID: PMC3210757.

Gnanadurai R, Ninan MM, Arul AO, Sam AS, James P, Gupta R, Michael JS. Challenges in the management of slowly growing non-tuberculous mycobacteria causing pulmonary disease: Perspectives from a high burden country. Indian J Med Microbiol. 2021 Aug 10:S0255-0857(21)04179-7. doi: 10.1016/j.ijmmb.2021.07.005. Epub ahead of print. PMID: 34389186.

Boehme CC, Nicol MP, Nabeta P, Michael JS, Gotuzzo E, Tahirli R, Gler MT, Blakemore R, Worodria W, Gray C, Huang L, Caceres T, Mehdiyev R, Raymond L, Whitelaw A, Sagadevan K, Alexander H, Albert H, Cobelens F, Cox H, Alland D, Perkins MD. Feasibility, diagnostic accuracy, and effectiveness of decentralised use of the Xpert MTB/RIF test for diagnosis of tuberculosis and multidrug resistance: a multicentre implementation study. Lancet. 2011 Apr 30;377(9776):1495-505. doi: 10.1016/S0140-6736(11)60438-8. Epub 2011 Apr 18. PMID: 21507477; PMCID: PMC3085933.

Duffy S, Srinivasan S, Michael JS , Behr MA , Kapur V. Mycobacterium orygis: a zoonosis, zooanthroponosis, or both? Lancet Microbe. Vol 1 October 2020 e241 Link

Thomas A, Sebastian A, George R, Thomas DS, Rebekah G, Rupali P, Michael JS, Peedicayil A. Abdominal Tuberculosis Mimicking Ovarian Cancer: A Diagnostic Dilemma. J Obstet Gynaecol India. 2020 Aug;70(4):304-309. doi: 10.1007/s13224-020-01322-8. Epub 2020 May 9. PMID: 32764852; PMCID: PMC7381535.

Rufai SB, McIntosh F, Poojary I, Chothe S, Sebastian A, Albert I, Praul C, Venkatesan M, Mahata G, Maity H, Dandapat P, Michael JS, Katani R, Kapur V, Behr MA. Complete Genome Sequence of Mycobacterium orygis Strain 51145. Microbiol Resour Announc. 2021 Jan 7;10(1):e01279-20. doi: 10.1128/MRA.01279-20. PMID: 33414309; PMCID: PMC8407732.

George B, Kulkarni U, Lionel S, Devasia AJ, Aboobacker FN, Lakshmi KM, Selvarajan S, Korula A, Rose W, Varghese GM, Rupali P, Veeraraghavan B, Michael JS, Abraham A, Abraham A, Mathews V. Haploidentical transplantation is feasible and associated with reasonable outcomes despite major infective complications-A single center experience from India. Transplant Cell Ther. 2022 Jan;28(1):45.e1-45.e8. doi: 10.1016/j.jtct.2021.09.020. Epub 2021 Oct 2. PMID: 34607073.

Denkinger CM, Kalantri Y, Schumacher SG, Michael JS, Shankar D, Saxena A, Sriram N, Balamugesh T, Luo R, Pollock NR, Pai M, Christopher DJ. Challenges in the development of an immunochromatographic interferon-gamma test for diagnosis of pleural tuberculosis. PLoS One. 2013 Dec 23;8(12):e85447. doi: 10.1371/journal.pone.0085447. PMID: 24376880; PMCID: PMC3871622.

Balasundaram A, George R, Abraham A, Michael JS. Chronic mucocutaneous candidiasis due to signal transducer and activator of transcription 1 (STAT 1) mutation in an indian patient – A case report. Indian Dermatol Online J 2022;13:90-3. DOI: 10.4103/idoj.IDOJ_898_20

Bhanuprasad K, Manesh A, Devasagayam E, Varghese L, Cherian LM, Kurien R, Karthik R, Deodhar D, Vanjare H, Peter J, Michael JS, Thomas M, Samuel P, Varghese GM. Risk factors associated with the mucormycosis epidemic during the COVID-19 pandemic. Int J Infect Dis. 2021 Oct;111:267-270. doi: 10.1016/j.ijid.2021.08.037. Epub 2021 Aug 24. PMID: 34450284; PMCID: PMC8383616.

Sreelekshmi T. S. Marilyn M. Ninan Arul Premanand Anila Chacko, Rani Diana Sahni, Joy S. Michael. Candida utilis: a rare cause of septicemia in children. Access Microbiology 2021;3(10):000281 DOI 10.1099/acmi.0.000281

S D, S TD, Gupta R, Varughese S, Varghese GM, George B, Michael JS. Effectiveness of a real-time PCR for diagnosis of Pneumocystis pneumonia in immunocompromised patients - Experience from a tertiary care center, India J Mycol Med. 2022 May;32(2):101241. doi: 10.1016/j.mycmed.2021.101241. Epub 2021 Dec 30. PMID: 34999296.

Murugesan M, Ranjan J, Devanga Ragupathi NK, Michael JS, Viggeswarpu S, Wilson BP, Veeraraghavan B. Diagnostic methods and identification challenges experienced in a Burkholderia contaminans outbreak occurred in a tertiary care centre. Indian J Med Microbiol. 2021 Apr;39(2):192-195. doi: 10.1016/j.ijmmb.2020.10.023. Epub 2020 Nov 3. PMID: 33966861.

Mehdiratta K, Singh S, Sharma S, Bhosale RS, Choudhury R, Masal DP, Manocha A, Dhamale BD, Khan N, Asokachandran V, Sharma P, Ikeh M, Brown AC, Parish T, Ojha AK, Michael JS, Faruq M, Medigeshi GR, Mohanty D, Reddy DS, Natarajan VT, Kamat SS, Gokhale RS. Kupyaphores are zinc homeostatic metallophores required for colonization of Mycobacterium tuberculosis. Proc Natl Acad Sci U S A. 2022 Feb 22;119(8):e2110293119. doi: 10.1073/pnas.2110293119. PMID: 35193957; PMCID: PMC8872721.

Joseph L, Paul H, Premkumar J; Rabindranath, Paul R, Michael JS. Biomedical waste management: study on the awareness and practice among healthcare workers in a tertiary teaching hospital. Indian J Med Microbiol. 2015 Jan-Mar;33(1):129-31. doi: 10.4103/0255-0857.148411. PMID: 25560016.

Kaswala C, Schmiedel Y, Kundu D, George MM, Dayanand D, Devasagayam E, Manesh S A, Kumar SS, Michael JS, Ninan MM, Chacko G, Zachariah A, Sathyendra S, Hansdak SG, Iyadurai R, Christopher DJ, Gupta R, Karthik R, Abraham OC, Varghese GM. Accuracy of Gene Xpert MTB/RIF Ultra for the diagnosis of tuberculosis in adult patients: A retrospective cohort study. Int J Infect Dis. 2022 Jul 7:S1201-9712(22)00410-6. doi: 10.1016/j.ijid.2022.07.016. Epub ahead of print. PMID: 35811084.

Varghese L, Kurien R, Diana Sahni R, Manesh A, Mary Cherian L, Peter D, Dayanand D, Sarojini Michael J, Thomas M, Rupa V, Pulimood S, Varghese GM. Rhinofacial conidiobolomycosis: Clinical and microbiological characterisation and shift in the management of a rare disease. Mycoses. 2021 Aug;64(8):882-889. doi: 10.1111/myc.13294. Epub 2021 May 9. PMID: 33915007.

Michael RC, Michael JS, Mathews MS, Rupa V. Unusual presentation of entomophthoromycosis. Indian J Med Microbiol. 2009 Apr-Jun;27(2):156-8. doi: 10.4103/0255-0857.49432. PMID: 19384042.

Rupa V, Peter J, Michael JS, Thomas M, Irodi A, Rajshekhar V. Chronic Granulomatous Invasive Fungal Sinusitis in Patients With Immunocompetence: A Review. Otolaryngol Head Neck Surg. 2022 May 3:1945998221097006. doi: 10.1177/01945998221097006. Epub ahead of print. Erratum in: Otolaryngol Head Neck Surg. 2022 Oct 22;:1945998221133597. PMID: 35503655.

Cherian LM, Varghese L, Rupa V, Bright RR, Abraham L, Panicker R, R N, Peter J, Nayak A, Shyam A, Varghese GM, Manesh A, Karuppusami R, George K, George T, Lenin A, Hansdak SG, I R, Michael JS, Ninan M, Thomas M, Kurian R, Mammen S, Kurien R. Rhino-orbito-cerebral mucormycosis: patient characteristics in pre-COVID-19 and COVID-19 period. Rhinology. 2022 Dec 1;60(6):427-434. doi: 10.4193/Rhin22.099. PMID: 36150158.

Ninan MM, Rupali P, Varghese GM, Shalini EB, Venkatesh K, Jesudason MR, Rebekah G, Michael JS. Xpert Ultra in diagnosing extrapulmonary TB: accuracy and trace calls. Int J Tuberc Lung Dis. 2022 May 1;26(5):441-445 . doi: 10.5588/ijtld.21.0480. PMID: 35505481.

Suresh CS, Ninan MM, Zachariah A, Michael JS. Cryptococcosis with Tuberculosis: Overlooked Coinfections. J Glob Infect Dis. 2021 Aug 7;13(3):139-141. doi: 10.4103/jgid.jgid_330_20. PMID: 34703154; PMCID: PMC8491810.

Kurien R, Varghese L, Cherian LM, Sundaresan R, John M, Mammen MD, Inja RR, Manesh A, Paul H, Gurijala PR, Michael JS, Thomas M, Abhilash KPP, Varghese AM, Rupa V. Revised workflow practices in the management of acute invasive fungal sinusitis during the coronavirus disease 2019 pandemic. J Laryngol Otol. 2022 Dec;136(12):1314-1319. doi: 10.1017/S0022215122001888. Epub 2022 Aug 16. PMID: 35971740.

Benjamin SR, Narayanan D, Chandy ST, Gnanamuthu BR, Michael JS, Kodiatte TA. Pulmonary mucormycosis-a case series. Indian J Thorac Cardiovasc Surg. 2022 Mar;38(2):177-182. doi: 10.1007/s12055-021-01272-4. Epub 2021 Oct 30. PMID: 34744334; PMCID: PMC8556863.

Denkinger CM, Kalantri Y, Schumacher SG, Michael JS, Shankar D, Saxena A, Sriram N, Balamugesh T, Luo R, Pollock NR, Pai M, Christopher DJ. Challenges in the development of an immunochromatographic interferon-gamma test for diagnosis of pleural tuberculosis. PLoS One. 2013 Dec 23;8(12):e85447. doi: 10.1371/journal.pone.0085447. PMID: 24376880; PMCID: PMC3871622.

George B, Kulkarni U, Lionel S, Devasia AJ, Aboobacker FN, Lakshmi KM, Selvarajan S, Korula A, Rose W, Varghese GM, Rupali P, Veeraraghavan B, Michael JS, Abraham A, Abraham A, Mathews V. Haploidentical transplantation is feasible and associated with reasonable outcomes despite major infective complications-A single center experience from India. Transplant Cell Ther. 2022 Jan;28(1):45.e1-45.e8. doi: 10.1016/j.jtct.2021.09.020. Epub 2021 Oct 2. PMID: 34607073.

Duffy SC, Venkatesan M, Chothe S, Poojary I, Verghese VP, Kapur V, Behr MA, Michael JS. Development of a Multiplex Real-Time PCR Assay for Mycobacterium bovis BCG and Validation in a Clinical Laboratory. Microbiol Spectr. 2021 Oct 31;9(2):e0109821. doi: 10.1128/Spectrum.01098-21. Epub 2021 Sep 8. PMID: 34494864; PMCID: PMC8557883.

Muthuirulandi Sethuvel DP, Mutreja A, Pragasam AK, Vasudevan K, Murugan D, Anandan S, Michael JS, Walia K, Veeraraghavan B. Phylogenetic and Evolutionary Analysis Reveals the Recent Dominance of Ciprofloxacin-Resistant Shigella sonnei and Local Persistence of S. flexneri Clones in India. mSphere. 2020 Oct 7;5(5):e00569-20. doi: 10.1128/mSphere.00569-20. PMID: 33028681; PMCID: PMC7568650.

Duffy SC, Srinivasan S, Michael JS, Behr MA, Kapur V. Mycobacterium orygis: a zoonosis, zooanthroponosis, or both? - Authors' reply. Lancet Microbe. 2020 Oct;1(6):e241. doi: 10.1016/S2666-5247(20)30145-2. Epub 2020 Oct 7. PMID: 35544221.

Rupa V, Peter J, Michael JS, Thomas M, Irodi A, Rajshekhar V. Chronic Granulomatous Invasive Fungal Sinusitis in Patients With Immunocompetence: A Review. Otolaryngol Head Neck Surg. 2022 May 3:1945998221097006. doi: 10.1177/01945998221097006. Epub ahead of print. PMID: 35503655.

Cherian LM, Varghese L, Rupa V, Bright RR, Abraham L, Panicker R, R N, Peter J, Nayak A, Shyam A, Varghese GM, Manesh A, Karuppusami R, George K, George T, Lenin A, Hansdak SG, I R, Michael JS, Ninan M, Thomas M, Kurian R, Mammen S, Kurien R. Rhino-orbito-cerebral mucormycosis: patient characteristics in pre-COVID-19 and COVID-19 period. Rhinology. 2022 Dec 1;60(6):427-434. doi: 10.4193/Rhin22.099. PMID: 36150158.

Olbrich L, Nliwasa M, Sabi I, Ntinginya NE, Khosa C, Banze D, Corbett EL, Semphere R, Verghese VP, Michael JS, Graham SM, Egere U, Schaaf HS, Morrison J, McHugh TD, Song R, Nabeta P, Trollip A, Geldmacher C, Hoelscher M, Zar HJ, Heinrich N; RaPaed-AIDA-TB Consortium. Rapid and Accurate Diagnosis of Pediatric Tuberculosis Disease: A Diagnostic Accuracy Study for Pediatric Tuberculosis. Pediatr Infect Dis J. 2023 May 1;42(5):353-360. doi: 10.1097/INF.0000000000003853. Epub 2023 Feb 16. PMID: 36854097; PMCID: PMC10097493.

George JT, Miraclin AT, Sathyendra S, Michael JS, Prasad J, Rebekah G. Pulmonary tuberculosis and diabetes mellitus: Clinical profile and outcomes. Int J Mycobacteriol. 2022 Oct-Dec;11(4):400-406. doi: 10.4103/ijmy.ijmy_154_22. PMID: 36510925.

Ninan MM, Venkatesan M, Balaji V, Rupali P, Michael JS. Pulmonary nocardiosis: Risk factors and species distribution from a high burden centre. Indian J Med Microbiol. 2022 Oct-Dec;40(4):582-584. doi: 10.1016/j.ijmmb.2022.08.010. Epub 2022 Sep 8. PMID: 36088197.

Ninan MM, Rupali P, Varghese GM, Shalini EB, Venkatesh K, Jesudason MR, Rebekah G, Michael JS. Xpert Ultra in diagnosing extrapulmonary TB: accuracy and trace calls. Int J Tuberc Lung Dis. 2022 May 1;26(5):441-445. doi: 10.5588/ijtld.21.0480. PMID: 35505481.

Sumanth LJ, Suresh CR, Venkatesan M, Manesh A, Behr MA, Kapur V, Michael JS. Clinical features of human tuberculosis due to Mycobacterium orygis in Southern India. J Clin Tuberc Other Mycobact Dis. 2023 Apr 15;32:100372. doi: 10.1016/j.jctube.2023.100372. PMID: 37168873; PMCID: PMC10164920. Link

Balasundaram A, George R, Abraham A, Michael JS. Chronic Mucocutaneous Candidiasis due to Signal Transducer and Activator of Transcription 1 (STAT 1) Mutation in an Indian Patient - A Case Report. Indian Dermatol Online J. 2022 Jan 24;13(1):90-93. doi: 10.4103/idoj.IDOJ_898_20. PMID: 35198474; PMCID: PMC8809172.

Kaswala C, Schmiedel Y, Kundu D, George MM, Dayanand D, Devasagayam E, S AM, Kumar SS, Michael JS, Ninan MM, Chacko G, Zachariah A, Sathyendra S, Hansdak SG, Iyadurai R, Christopher DJ, Gupta R, Karthik R, Abraham OC, Varghese GM. Accuracy of Xpert MTB/RIF Ultra for the diagnosis of tuberculosis in adult patients: a retrospective cohort study. Int J Infect Dis. 2022 Sep;122:566-568. doi: 10.1016/j.ijid.2022.07.016. Epub 2022 Jul 8. PMID: 35811084.

Schumacher SG, Thangakunam B, Denkinger CM, Oliver AA, Shakti KB, Qin ZZ, Michael JS, Luo R, Pai M, Christopher DJ. Impact of point-of-care implementation of Xpert® MTB/RIF: product vs. process innovation. Int J Tuberc Lung Dis. 2015 Sep;19(9):1084-90. doi: 10.5588/ijtld.15.0120. PMID: 26260830.

Benjamin SR, Narayanan D, Chandy ST, Gnanamuthu BR, Michael JS, Kodiatte TA. Pulmonary mucormycosis-a case series. Indian J Thorac Cardiovasc Surg. 2022 Mar;38(2):177-182. doi: 10.1007/s12055-021-01272-4. Epub 2021 Oct 30. PMID: 34744334; PMCID: PMC8556863.

Thomas L, Verghese VP, Chacko A, Michael JS, Jeyaseelan V. Accuracy and agreement of the Tuberculin Skin Test (TST) and the QuantiFERON-TB Gold In-tube test (QFT) in the diagnosis of tuberculosis in Indian children. Indian J Med Microbiol. 2021 Jun 24:S0255-0857(21)04124-4. doi: 10.1016/j.ijmmb.2021.05.022. Epub ahead of print. PMID: 34176665.

Muthuirulandi Sethuvel DP, Anandan S, Murugan D, Asokan K, Vasudevan K, Jacob JJ, Walia K, Michael JS, Veeraraghavan B. Hybrid genome assembly of Shigella sonnei reveals the novel finding of chromosomal integration of an IncFII plasmid carrying a mphA gene. Access Microbiol. 2020 Dec 9;3(2):000189. doi: 10.1099/acmi.0.000189. PMID: 34151144; PMCID: PMC8209639.

Manesh A, Devasagayam E, Bhanuprasad K, Varghese L, Kurien R, Cherian LM, Dayanand D, George MM, Kumar SS, Karthik R, Vanjare H, Peter J, Michael JS, Thomas M, Mathew BS, Samuel P, Peerawaranun P, Mukaka M, Rupa V, Varghese GM. Short intravenous amphotericin B followed by oral posaconazole using a simple, stratified treatment approach for diabetes or COVID-19-associated rhino-orbito-cerebral mucormycosis: a prospective cohort study. Clin Microbiol Infect. 2023 Oct;29(10):1298-1305. doi: 10.1016/j.cmi.2023.06.017. Epub 2023 Jun 20. PMID: 37348653; PMCID: PMC10281032.

Thampy A, Ninan MM, Michael JS, James P, Rupali P. Clinical implications of high-risk mutations in drug resistant tuberculosis (DR-TB): An observational cohort study. Indian J Med Microbiol. 2021 Oct-Dec;39(4):534-536. doi: 10.1016/j.ijmmb.2021.05.020. Epub 2021 Jun 12. PMID: 34127320.

Vyas S, Thangakunam B, Gupta R, Michael JS, Christopher DJ. Interferon gamma release assay and tuberculin skin test positivity in sarcoidosis. Lung India. 2015 Jan-Feb;32(1):91-2. doi: 10.4103/0970-2113.148467. PMID: 25624613; PMCID: PMC4298936.

R L, Ninan MM, Kurien R, N A F, Sahni RD, Michael JS. Cryptic aspergillosis: a rare entity and a diagnostic challenge. Access Microbiol. 2022 Apr 12;4(4):000344. doi: 10.1099/acmi.0.000344. PMID: 35812705; PMCID: PMC9260091.

Kurien R, Varghese L, Cherian LM, Sundaresan R, John M, Mammen MD, Inja RR, Manesh A, Paul H, Gurijala PR, Michael JS, Thomas M, Abhilash KPP, Varghese AM, Rupa V. Revised workflow practices in the management of acute invasive fungal sinusitis during the coronavirus disease 2019 pandemic. J Laryngol Otol. 2022 Aug 16:1-6. doi: 10.1017/S0022215122001888. Epub ahead of print. PMID: 35971740.

Manesh A, Rupali P, Sullivan MO, Mohanraj P, Rupa V, George B, Michael JS. Mucormycosis-A clinicoepidemiological review of cases over 10 years. Mycoses. 2019 Apr;62(4):391-398. doi: 10.1111/myc.12897. Epub 2019 Feb 19. PMID: 30685896.

Dash N, Verghese VP, Rose W, Michael JS, Rebekah G, Venkatesan M, Chacko A. Clinical, Microbiological Profile and Treatment Outcomes of Infants with BCG Adenitis: A Retrospective Study. J Trop Pediatr. 2022 Oct 6;68(6):fmac094. doi: 10.1093/tropej/fmac094. PMID: 36370459.

S D, S TD, Gupta R, Varughese S, Varghese GM, George B, Michael JS. Effectiveness of a real-time PCR for diagnosis of Pneumocystis pneumonia in immunocompromised patients - Experience from a tertiary care center, India. J Mycol Med. 2022 May;32(2):101241. doi: 10.1016/j.mycmed.2021.101241. Epub 2021 Dec 30. PMID: 34999296.

Solaimalai D, Devanga Ragupathi NK, Ranjini K, Paul H, Verghese VP, Michael JS, Veeraraghavan B, James EJ. Ultrasound gel as a source of hospital outbreaks: Indian experience and literature review. Indian J Med Microbiol. 2019 Apr-Jun;37(2):263-267. doi: 10.4103/ijmm.IJMM_19_249. PMID: 31745029

Bhanuprasad K, Manesh A, Devasagayam E, Varghese L, Cherian LM, Kurien R, Karthik R, Deodhar D, Vanjare H, Peter J, Michael JS, Thomas M, Samuel P, Varghese GM. Risk factors associated with the mucormycosis epidemic during the COVID-19 pandemic. Int J Infect Dis. 2021 Oct;111:267-270. doi: 10.1016/j.ijid.2021.08.037. Epub 2021 Aug 24. PMID: 34450284; PMCID: PMC8383616.

Kumar SS, Solomon R, Gautam P, Inbaraj LR, Sivadasan A, Michael JS, Karthik R, Varghese GM, Christudass CS, Samuel P, Manesh A. Leukotriene A4 hydrolase (LTA4H rs17525495) gene polymorphisms and paradoxical reactions in extrapulmonary tuberculosis. Sci Rep. 2023 Mar 6;13(1):3746. doi: 10.1038/s41598-023-30923-2. PMID: 36879040; PMCID: PMC9988831.

S AM, Gautam P, D SSK, Mannam P, Jasper A, Gunasekaran K, Thomas NC, Benjamin RN, Inbaraj LR, Devasagayam E, George MM, Karthik R, Abraham OC, Vanjare HA, Sivadasan A, Prabhakar AT, Jonathan E, Michael JS, Samuel P, Varghese GM. Effectiveness of adjunctive high dose infliximab therapy to improve disability free survival among patients with severe CNS tuberculosis: a matched retrospective cohort study. Clin Infect Dis. 2023 Jul 5:ciad401. doi: 10.1093/cid/ciad401. Epub ahead of print. PMID: 37405816.

Bera C, Michael JS, Burad D, Shirly SB, Gibikote S, Ramakrishna B, Goel A, Eapen CE. Tissue Xpert™ MTB/Rif assay is of limited use in diagnosing peritoneal tuberculosis in patients with exudative ascites. Indian J Gastroenterol. 2015 Sep;34(5):395-8. doi: 10.1007/s12664-015-0599-7. Epub 2015 Nov 4. PMID: 26531065.

Michael JS, Venkatesan M, Ninan MM, Solaimalai D, Sumanth LJ, Varghese L, Kurien R, Varghese RP, C GPD. Whole genome analysis of Rhizopus species causing rhino-cerebral mucormycosis during the COVID-19 pandemic. Front Cell Infect Microbiol. 2023 Oct 31;13:1251456. doi: 10.3389/fcimb.2023.1251456. PMID: 38029246; PMCID: PMC10644343.

Manesh A, Gautam P, Kumar D SS, Mannam P, Jasper A, Gunasekaran K, Thomas NC, Benjamin RN, Inbaraj LR, Devasagayam E, George MM, Karthik R, Abraham OC, Vanjare HA, Sivadasan A, Appaswamy PT, Jonathan E, Michael JS, Samuel P, Varghese GM. Effectiveness of Adjunctive High-Dose Infliximab Therapy to Improve Disability-Free Survival Among Patients With Severe Central Nervous System Tuberculosis: A Matched Retrospective Cohort Study. Clin Infect Dis. 2023 Nov 17;77(10):1460-1467. doi: 10.1093/cid/ciad401. PMID: 37405816.

Olbrich L, Verghese VP, Franckling-Smith Z, Sabi I, Ntinginya NE, Mfinanga A, Banze D, Viegas S, Khosa C, Semphere R, Nliwasa M, McHugh TD, Larsson L, Razid A, Song R, Corbett EL, Nabeta P, Trollip A, Graham SM, Hoelscher M, Geldmacher C, Zar HJ, Michael JS, Heinrich N; RaPaed-TB consortium. Diagnostic accuracy of a three-gene Mycobacterium tuberculosis host response cartridge using fingerstick blood for childhood tuberculosis: a multicentre prospective study in low-income and middle-income countries. Lancet Infect Dis. 2024 Feb;24(2):140-149. doi: 10.1016/S1473-3099(23)00491-7. Epub 2023 Oct 30. PMID: 37918414; PMCID: PMC10808504.

Danchuk SN, Solomon OE, Kohl TA, Dreyer V, Barilar I, Utpatel C, Niemann S, Soolingen DV, Anthony R, van Ingen J, Michael JS, Behr MA. Challenging the gold standard: the limitations of molecular assays for detection of Mycobacterium tuberculosis heteroresistance. Thorax. 2024 Jan 29:thorax-2023-220202. doi: 10.1136/thorax-2023-220202. Epub ahead of print. PMID: 38286614.

Kurien R, Varghese L, Cherian LM, Inja RR, Thampi M, Chowdhary S, Bright RR, Abraham L, Panicker R, Rajendran N, Ganesan P, Sahu S, Irodi A, Manesh A, Peter J, Michael JS, Thomas M, Karuppusami R, Varghese GM, Rupa V. A Comparative Study of Acute Invasive Fungal Sinusitis During the First and Second Waves of the COVID-19 Pandemic. Indian J Otolaryngol Head Neck Surg. 2024 Feb;76(1):611-619. doi: 10.1007/s12070-023-04226-x. Epub 2023 Sep 16. PMID: 38440599; PMCID: PMC10909060.

Abraham A, Manesh A, Regi S, Michael J, Kumar R, Thomas M, Cherian L, Varghese L, Kurien R, Moorthy R, Nair B, Rajshekhar V, Vedantam R. Pott's puffy tumor: An unusual complication of rhino-orbito-cerebral mucormycosis. World Neurosurgery: X2024;23:100387. Link

Joy  Sarojini Michael. Replacing Formalin with Phenoxetol as an Immersion Medium in a Human Cadaveric Storage Facility Current Medical Issues 2024 22(1):7. DOI: 10.4103/CMI.CMI_84_23

Ninan MM, Sahni RD, Chacko B, Balaji V, Michael JS. Candida auris: Clinical profile, diagnostic challenge and susceptibility pattern: Experience from a tertiary-care centre in South India. J Glob Antimicrob Resist. 2020 Jun;21:181-185. doi: 10.1016/j.jgar.2019.10.018. Epub 2019 Oct 23. PMID: 31655136.

Jayaprakasam M, Michael JS, Jain P, Basu S, Ajbani K, Shanmugam SK, Ninan MM, Choudhary H, Jain A, Pandey RM, Gupta N; Research Group. Diagnostic accuracy of real-time PCR assay 'Quantiplus® MTB FAST' for detection of adult pulmonary tuberculosis (PTB): A multi-centric study. Indian J Med Res. 2025 Apr;161(4):346-353. doi: 10.25259/IJMR_767_2025. PMID: 40536373; PMCID: PMC12178193.

Sumanth LJ, Karthik R, Chandramohan A, Irodi A, Sahni RD, Michael JS. Microbiological and Clinical Epidemiology of Lomentospora prolificans infections. Indian J Med Microbiol. 2025 Nov-Dec;58:100957. doi: 10.1016/j.ijmmb.2025.100957. Epub 2025 Sep 3. PMID: 40912517.